http://www.sbgn.org/index.php?title=Special:Recentchanges&feed=atom 2012-05-17T09:27:48Z Track the most recent changes to the wiki in this feed. MediaWiki 1.12.0  http://www.sbgn.org/index.php?title=Editors_Telecon_19_Apr_2012&diff=2760&oldid=prev 2012-05-17T08:54:10Z

<p><span class="autocomment">PD User manual: </span> </p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 08:54, 17 May 2012</td> </tr> <tr><td colspan='4' align='center' class='diff-multi'>(2 intermediate revisions not shown.)</td></tr><tr><td colspan="2" class="diff-lineno">Line 13:</td> <td colspan="2" class="diff-lineno">Line 13:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>ED mentions the existence of 2 SBGN google summer of code projects. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>ED mentions the existence of 2 SBGN google summer of code projects. </div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div># Short description: The main aim of the project is to create SBGN compliant views for the networks used to visualize cancer maps at “cBio Cancer Genomics Portal” . Two stages: First, create a Cytoscape Web based viewer for biological networks using SBGN Process Description notation. Then, customize this component for cBio Cancer Genomics portal so as to overlay genomics data onto such network views. </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div># Short description: The main aim of the project is to create SBGN compliant views for the networks used to visualize cancer maps at “cBio Cancer Genomics Portal” . Two stages: First, create a Cytoscape Web based viewer for biological networks using SBGN Process Description notation. Then, customize this component for cBio Cancer Genomics portal so as to overlay genomics data onto such network views.</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>&#160;</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">#</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Funding ==</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>== Funding ==</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 34:</td> <td colspan="2" class="diff-lineno">Line 32:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>NLN started a draft. The idea is to remove the technical parts from the spec, and focus on the biology. This should be a user manual, and explain how to use SBGN PD, writing and interpreting maps. The user manual to be written for HARMONY is for L2 V1.3. Once it is done, we can focus on the spec for L1 V2, which is free to be very technical, unencumbered by the part targeted to end-users. Note that the user-manual is not a list of examples. People are welcomed to put those examples on the Wiki. AS will help with the user manual. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>NLN started a draft. The idea is to remove the technical parts from the spec, and focus on the biology. This should be a user manual, and explain how to use SBGN PD, writing and interpreting maps. The user manual to be written for HARMONY is for L2 V1.3. Once it is done, we can focus on the spec for L1 V2, which is free to be very technical, unencumbered by the part targeted to end-users. Note that the user-manual is not a list of examples. People are welcomed to put those examples on the Wiki. AS will help with the user manual. </div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"> </del>We will discuss it at HARMONY, gathering input from attendees. Only then will we circulate it to general SBGN mailing list.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>We will discuss it at HARMONY, gathering input from attendees. Only then will we circulate it to general SBGN mailing list.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>== Relationship between languages (ED)</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>== Relationship between languages (ED) <ins style="color: red; font-weight: bold; text-decoration: none;">==</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>To be discussed in HARMONY.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>To be discussed in HARMONY.</div></td></tr> </table>

Lenov